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Job Description Summary

The CDR Phenotyper will support the development and validation of high-quality phenotypes within Clinical Data Repositories (CDRs), including but not limited to All of Us Research, Epic Cosmos, and other OMOP-based systems. This role is integral to the research efforts led by Dr. Alexander Alekseyenko and his collaborators, enabling robust data-driven studies through precise phenotype definitions and analytics.

Entity

Medical University of South Carolina (MUSC - Univ)

Worker Type

Employee

Worker Sub-Type​

Temporary

Cost Center

CC000955 COM Biomedical Informatics Center CC

Pay Rate Type

Hourly

Pay Grade

University-04

Pay Range

33,339.00 - 47,509.00 - 61,680.000

Scheduled Weekly Hours

10

Work Shift

Job Description

Job Description:

The CDR Phenotyper will support the development and validation of high-quality phenotypes within Clinical Data Repositories (CDRs), including but not limited to All of Us Research, Epic Cosmos, and other OMOP-based systems. This role is integral to the research efforts led by Dr. Alexander Alekseyenko and his collaborators, enabling robust data-driven studies through precise phenotype definitions and analytics.

Job Duties:

1. Collect phenotype descriptions from domain experts (30%)

a. Conduct structured interviews and meetings with clinicians and researchers to gather phenotype definitions

b. Translate clinical concepts into computable definitions using standardized terminologies

c. Document phenotype requirements and maintain version control of definitions

2. Specify and validate phenotypes (30%)

a. Develop phenotype algorithms using SQL, R, and Python within OMOP-based environments

b. Perform iterative validation using test cohorts and feedback from domain experts

c. Ensure reproducibility and accuracy of phenotype definitions across datasets

3. Gather descriptive statistics (30%)

a. Generate summary statistics and visualizations for phenotypes across different cohorts

b. Analyze prevalence, demographic distributions, and comorbidity patterns

c. Prepare reports and presentations for internal and external collaborators

4. Complete necessary trainings (10%)

a. Participate in required institutional and project-specific training (e.g., data privacy, OMOP tools, All of Us protocols)

b. Stay current with updates in CDR platforms and data governance policies

c. Engage in professional development relevant to clinical informatics and data science

Additional Knowledge, skill, ability preferred:

Proficiency in R and Python for data manipulation and analysis

Experience with SQL for querying large-scale clinical databases

Familiarity with the OMOP Common Data Model and related tools

Understanding of clinical terminology and coding systems (e.g., ICD, SNOMED, LOINC)

Ability to communicate effectively with clinical and technical stakeholders

Additional Job Description

Minimum Requirements: A high school diploma and two years work experience as a Statistical and Research Analyst I.. A bachelor's degree with mathematics and/or statistics courses may be substituted for the required work experience. Physical Requirements: (Note: The following descriptions are applicable to this section: Continuous - 6-8 hours per shift; Frequent - 2-6 hours per shift; Infrequent - 0-2 hours per shift) Ability to perform job functions in an upright position. (Frequent) Ability to perform job functions in a seated position. (Frequent) Ability to perform job functions while walking/mobile. (Frequent) Ability to work indoors. (Continuous) Ability to work outdoors in all weather and temperature extremes. (Infrequent) Ability to work in confined/cramped spaces. (Infrequent) Ability to perform job functions from kneeling positions. (Infrequent) Ability to bend at the waist. (Frequent) Ability to squat and perform job functions. (Infrequent) Ability to perform 'pinching' operations. (Infrequent) Ability to fully use both hands/arms. (Continuous) Ability to perform repetitive motions with hands/wrists/elbows and shoulders. (Frequent) Ability to reach in all directions. (Frequent) Possess good finger dexterity. (Continuous) Ability to maintain tactile sensory functions. (Continuous) Ability to lift and carry 15 lbs., unassisted. (Frequent) Ability to lift objects, up to 15 lbs., from floor level to height of 36 inches, unassisted. (Frequent) Ability to lower objects, up to 15 lbs., from height of 36 inches to floor level, unassisted. (Frequent) Ability to push/pull objects, up to 15 lbs., unassisted. (Frequent) Ability to maintain 20/40 vision, corrected. (Continuous) Ability to see and recognize objects close at hand. (Continuous) Ability to see and recognize objects at a distance. (Continuous) Ability to match or discriminate between colors. (Continuous) Ability to determine distance/relationship between objects; depth perception. (Continuous) Good peripheral vision capabilities. (Continuous) Ability to maintain hearing acuity, with correction. (Continuous) Ability to hear and/or understand whispered conversations at a distance of 3 feet. Ability to perform gross motor functions with frequent fine motor movements. (Continuous) Ability to work in dusty areas. (Infrequent)

If you like working with energetic enthusiastic individuals, you will enjoy your career with us!

The Medical University of South Carolina is an Equal Opportunity Employer. MUSC does not discriminate on the basis of race, color, religion or belief, age, sex, national origin, gender identity, sexual orientation, disability, protected veteran status, family or parental status, or any other status protected by state laws and/or federal regulations. All qualified applicants are encouraged to apply and will receive consideration for employment based upon applicable qualifications, merit and business need.

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